Stem-loop rno-mir-505

Accession

MI0003720

Description

Rattus norvegicus rno-mir-505 precursor miRNA

Literature search

28 open access papers mention rno-mir-505
(93 sentences)

Sequence

35645 reads, 36.0 reads per million, 501 experiments

aguggGGGAGCCAGGAAGUAUUGAUGUUUcugccagguuagCGUCAACACUUGCUGGUUUCCUcucu
((.(((((((((((.((((.((((((((.((....))..)))))))).)))).))))))))))).))

Structure

  u           G    A        -U  g 
ag ggGGGAGCCAG AAGU UUGAUGUU  cu c
|| ||||||||||| |||| ||||||||  ||  
uc cUCCUUUGGUC UUCA AACUGCga  gg c
  u           G    C        uu  a 

Annotation confidence High

Genome context

chrX: 143517014-143517080 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-505

Mature rno-miR-505-5p

• Accession: MIMAT0017226
• Description: Rattus norvegicus rno-miR-505-5p mature miRNA
• Sequence: 6 - GGGAGCCAGGAAGUAUUGAUGUUU - 29
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-505-3p

• Accession: MIMAT0003380
• Description: Rattus norvegicus rno-miR-505-3p mature miRNA
• Sequence: 42 - CGUCAACACUUGCUGGUUUCCU - 63
• Evidence: experimental ; cloned [1], Northern [1], SOLiD [2]

References

1. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249