Stem-loop mmu-mir-423

Accession

MI0004637

Symbol

MGI: Mir423

Description

Mus musculus mmu-mir-423 precursor miRNA mir-423

Gene
family

RF00870; mir-423

Literature search

34 open access papers mention mmu-mir-423
(142 sentences)

Sequence

1849044 reads, 4580 reads per million, 108 experiments

acuugugaggaaauaaaggaaguuaggcUGAGGGGCAGAGAGCGAGACUUUucuauuuuccaaaAGCUCGGUCUGAGGCCCCUCAGUcuugcuuccuaccccgcgcuug
....(((.((......(((((((.((((((((((((..(((.((((.(((((.........))))))))).)))...)))))))))))).)))))))...)).)))...

Structure

acuu   a  aaauaa       u            -AG   G    A     cua 
    gug gg      aggaagu aggcUGAGGGGC   AGA CGAG CUUUu   u
    ||| ||      ||||||| ||||||||||||   ||| |||| |||||   u
    cgc cc      uccuucg ucUGACUCCCCG   UCU GCUC GAaaa   u
-guu   g  ---cca       u            GAG   G    -     ccu 

Annotation confidence High

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context

chr11: 77078064-77078172 [-]

Mature mmu-miR-423-5p

• Accession: MIMAT0004825
• Description: Mus musculus mmu-miR-423-5p mature miRNA
• Sequence: 29 - UGAGGGGCAGAGAGCGAGACUUU - 51
• Evidence: experimental ; cloned [2], Illumina [3-4]

Mature mmu-miR-423-3p

• Accession: MIMAT0003454
• Description: Mus musculus mmu-miR-423-3p mature miRNA
• Sequence: 65 - AGCUCGGUCUGAGGCCCCUCAGU - 87
• Evidence: experimental ; MPSS [1], cloned [2], Illumina [3-4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 16582102
   The expression profile of microRNAs in mouse embryos
   "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
   "Nucleic Acids Res (2006) 34:1765-1771