Stem-loop mmu-mir-146b

Accession

MI0004665

Symbol

MGI: Mir146b

Description

Mus musculus mmu-mir-146b precursor miRNA

Literature search

188 open access papers mention mmu-mir-146b
(1119 sentences)

Sequence

670009 reads, 1704 reads per million, 105 experiments

gacugagagaacuuuggccaccuggcucUGAGAACUGAAUUCCAUAGGCUgugagcucuagcagacGCCCUAGGGACUCAGUUCUGGUgcccggcugugcuauaccauc
..............((((((((.(((.((.((((((((.((((.((((.(((..((....))..))).)))))))).)))))))))).))).)).)).)))).......

Structure

gacugagagaacuu    -  -  u   u  G        A    A    C   ga  u 
              uggc ca cc ggc cU AGAACUGA UUCC UAGG Ugu  gc c
              |||| || || ||| || |||||||| |||| |||| |||  ||  
              aucg gu gg ccg GG UCUUGACU AGGG AUCC Gca  cg u
-------cuaccau    u  c  c   U  -        C    -    C   ga  a 

Annotation confidence High

Genome context

chr19: 46342762-46342870 [+]

Mature mmu-miR-146b-5p

• Accession: MIMAT0003475
• Description: Mus musculus mmu-miR-146b-5p mature miRNA
• Sequence: 29 - UGAGAACUGAAUUCCAUAGGCU - 50
• Evidence: experimental ; MPSS [1], cloned [2], Illumina [3-4]

Mature mmu-miR-146b-3p

• Accession: MIMAT0004826
• Description: Mus musculus mmu-miR-146b-3p mature miRNA
• Sequence: 67 - GCCCUAGGGACUCAGUUCUGGU - 88
• Evidence: experimental ; cloned [2], Illumina [3-4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 16582102
   The expression profile of microRNAs in mouse embryos
   "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
   "Nucleic Acids Res (2006) 34:1765-1771