Stem-loop mmu-mir-297b

Accession

MI0004674

Symbol

MGI: Mir297b

Description

Mus musculus mmu-mir-297b precursor miRNA mir-297

Gene
family

RF04217; mir-297

Literature search

10 open access papers mention mmu-mir-297b
(12 sentences)

Sequence

4691 reads, 24 reads per million, 93 experiments

ucuauuugcuuguguguauAUGUAUGUGUGCAUGAACAUGUguauaugaauauacaUAUACAUACACACAUACCCAUAcaaacaugcauacaaacacacagaaaaugga
(((((((..((((((((.(((((((((.((.(((...((((((.((((.(((....))).)))).))))))...))).)).)))))))))...)))))))).)))))))

Structure

       gc        --a         G  C   AAC      a    a   u 
ucuauuu  uugugugu   uAUGUAUGU UG AUG   AUGUgu uaug aua a
|||||||  ||||||||   ||||||||| || |||   |||||| |||| |||  
agguaaa  gacacaca   auacguaca ac UAC   UACACA AUAC UAU c
       -a        aac         a  A   CCA      C    A   a 

Annotation confidence Medium

Genome context

chr2: 10511667-10511775 [+]

Clustered miRNAs

22 other miRNAs are < 10 kb from mmu-mir-297b

Mature mmu-miR-297b-5p

• Accession: MIMAT0003480
• Description: Mus musculus mmu-miR-297b-5p mature miRNA
• Sequence: 20 - AUGUAUGUGUGCAUGAACAUGU - 41
• Evidence: experimental ; MPSS [1], Illumina [3-4]

Mature mmu-miR-297b-3p

• Accession: MIMAT0004827
• Description: Mus musculus mmu-miR-297b-3p mature miRNA
• Sequence: 57 - UAUACAUACACACAUACCCAUA - 78
• Evidence: experimental ; cloned [2], Illumina [3-4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 16582102
   The expression profile of microRNAs in mouse embryos
   "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
   "Nucleic Acids Res (2006) 34:1765-1771