Stem-loop mmu-mir-450b

Accession

MI0004705

Symbol

MGI: Mir450b

Description

Mus musculus mmu-mir-450b precursor miRNA mir-450

Gene
family

RF00708; mir-450

Literature search

7 open access papers mention mmu-mir-450b
(16 sentences)

Sequence

21738 reads, 68 reads per million, 102 experiments

gauacagaauuauUUUUGCAGUAUGUUCCUGAAUAcauaacauaagcguAUUGGGAACAUUUUGCAUGCAUaauuuuguauc
(((((((((((((...(((((.((((((((.(((((...........))))))))))))).)))))...)))))))))))))

Structure

             UUU     U        G     auaa 
gauacagaauuau   UGCAG AUGUUCCU AAUAc    c
|||||||||||||   ||||| |||||||| |||||    a
cuauguuuuaaUA   ACGUU UACAAGGG UUAug    u
             CGU     U        -     cgaa 

Annotation confidence Medium

Genome context

chrX: 53047997-53048078 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from mmu-mir-450b

Mature mmu-miR-450b-5p

• Accession: MIMAT0003511
• Description: Mus musculus mmu-miR-450b-5p mature miRNA
• Sequence: 14 - UUUUGCAGUAUGUUCCUGAAUA - 35
• Evidence: experimental ; MPSS [1], cloned [2], Illumina [3-4]

Mature mmu-miR-450b-3p

• Accession: MIMAT0003512
• Description: Mus musculus mmu-miR-450b-3p mature miRNA
• Sequence: 50 - AUUGGGAACAUUUUGCAUGCAU - 71
• Evidence: experimental ; MPSS [1], cloned [2], Illumina [3-4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 16582102
   The expression profile of microRNAs in mouse embryos
   "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
   "Nucleic Acids Res (2006) 34:1765-1771