Stem-loop bta-mir-222

Accession

MI0004744

Description

Bos taurus bta-mir-222 precursor miRNA mir-221

Gene
family

RF00651; mir-221

Literature search

21 open access papers mention bta-mir-222
(62 sentences)

Sequence

50257 reads, 316 reads per million, 69 experiments

gcugcuggaauguguagguacccucaauggcucaguagccaguguagauccugucuuuuguaaucaguAGCUACAUCUGGCUACUGGGUcucugauggcaucuucuaccu
...........(((.((((.((.(((..(((((((((((((((((((...(((...........)))...))))).))))))))))))))..))).)).))))..)))..

Structure

gcugcuggaau   -u    a  c   au              -     auc   ucuu 
           gug  aggu cc uca  ggcucaguagccag uguag   cug    u
           |||  |||| || |||  |||||||||||||| |||||   |||    u
           cau  ucua gg agu  cUGGGUCAUCGGUC ACAUC   gac    g
---------uc   cu    c  u   cu              U     GAu   uaau 

Annotation confidence Not enough data

Genome context

chrX: 104687960-104688069 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-222

Mature bta-miR-222

• Accession: MIMAT0003530
• Description: Bos taurus bta-miR-222 mature miRNA
• Sequence: 69 - AGCUACAUCUGGCUACUGGGU - 89
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43