Stem-loop bta-mir-222

Accession

MI0004744

Description

Bos taurus bta-mir-222 precursor miRNA mir-221

Gene
family

RF00651; mir-221

Literature search

183 open access papers mention bta-mir-222
(883 sentences)

Sequence

1004145 reads, 448.0 reads per million, 319 experiments

gcugcuggaauguguagguacccucaauGGCUCAGUAGCCAGUGUAGAUCCugucuuuuguaaucaguAGCUACAUCUGGCUACUGGGUCUCUgauggcaucuucuaccu
...........(((.((((.((.(((..(((((((((((((((((((...(((...........)))...))))).))))))))))))))..))).)).))))..)))..

Structure

gcugcuggaau   -u    a  c   au              -     AUC   ucuu 
           gug  aggu cc uca  GGCUCAGUAGCCAG UGUAG   Cug    u
           |||  |||| || |||  |||||||||||||| |||||   |||    u
           cau  ucua gg agU  CUGGGUCAUCGGUC ACAUC   gac    g
---------uc   cu    c  u   CU              U     GAu   uaau 

Annotation confidence High

Genome context

X: 98125921-98126030 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-222

Mature bta-miR-222-5p

• Accession: MIMAT0050779
• Description: Bos taurus bta-miR-222-5p mature miRNA
• Sequence: 29 - GGCUCAGUAGCCAGUGUAGAUCC - 51
• Evidence: experimental ; cloned [1]

Mature bta-miR-222-3p

• Accession: MIMAT0003530
• Description: Bos taurus bta-miR-222-3p mature miRNA
• Sequence: 69 - AGCUACAUCUGGCUACUGGGUCUCU - 93
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43