Stem-loop bta-mir-34b

Accession

MI0004763

Description

Bos taurus bta-mir-34b precursor miRNA

Literature search

70 open access papers mention bta-mir-34b
(281 sentences)

Sequence

15135 reads, 8.0 reads per million, 235 experiments

gugcucgguuuguAGGCAGUGUAAUUAGCUGAUUGUacucucaugcuuacAAUCACUAGUUCCACUGCCAUCAaaacaaggcac
(((((..((((...(((((((.((((((.((((((((..(....)..)))))))))))))).)))))))....))))..)))))

Structure

     cg    -guA       U      C        cu u 
gugcu  guuu    GGCAGUG AAUUAG UGAUUGUa  c c
|||||  ||||    ||||||| |||||| ||||||||  |  
cacgg  caaa    CCGUCAC UUGAUC ACUAAcau  g a
     aa    ACUA       C      -        uc u 

Annotation confidence High

Genome context

15: 21816728-21816811 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-34b

Mature bta-miR-34b-5p

• Accession: MIMAT0003549
• Description: Bos taurus bta-miR-34b-5p mature miRNA
• Sequence: 14 - AGGCAGUGUAAUUAGCUGAUUGU - 36
• Evidence: experimental ; cloned [1]

Mature bta-miR-34b-3p

• Accession: MIMAT0060941
• Description: Bos taurus bta-miR-34b-3p mature miRNA
• Sequence: 51 - AAUCACUAGUUCCACUGCCAUCA - 73
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43