Stem-loop xtr-mir-1a-1

Accession

MI0004789

Description

Xenopus tropicalis xtr-mir-1a-1 precursor miRNA

Literature search

2 open access papers mention xtr-mir-1a-1
(7 sentences)

Sequence

35890 reads, 2444.0 reads per million, 4 experiments

accuguuuggaguacauacuucuuuauguacccauaugaacauacaaugcuaUGGAAUGUAAAGAAGUAUGUAuuuuuaucagg
.((((...(((((((((((((((((((((..(((((..(........)..))))).)))))))))))))))))))))...))))

Structure

a    uuu                     ac     ug aca 
 ccug   ggaguacauacuucuuuaugu  ccaua  a   u
 ||||   |||||||||||||||||||||  |||||  |    
 ggac   uuuuAUGUAUGAAGAAAUGUA  GGUau  u   a
-    uau                     -A     cg aac 

Annotation confidence Not enough data

Genome context

6: 108624338-108624421 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-1a-1

Mature xtr-miR-1a-3p

• Accession: MIMAT0003551
• Description: Xenopus tropicalis xtr-miR-1a-3p mature miRNA
• Sequence: 53 - UGGAAUGUAAAGAAGUAUGUA - 73
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112