Stem-loop xtr-mir-7-1

Accession

MI0004790

Description

Xenopus tropicalis xtr-mir-7-1 precursor miRNA

Sequence

309896 reads, 21028.0 reads per million, 4 experiments

uggauguugguuuaguucugugUGGAAGACUAGUGAUUUUGUUGuuuuuagauaacaacauugaCAACAAAUCGCAGUCUGCCAUAUGGcacagaccaugccucuaca
((((.((((((((.((.((((((((.(((((.(((((((.((((((................)))))))))))))))))).)))))))).)))))))).)).))))..

Structure

--    u  -      a  u        A     A       U      uuuagau 
  ugga gu ugguuu gu cugugUGG AGACU GUGAUUU GUUGuu       a
  |||| || |||||| || |||||||| ||||| ||||||| ||||||        
  aucu cg accaga ca GGUAUACC UCUGA CGCUAAA CAACag       a
ac    c  u      -  c        G     -       -      uuacaac 

Annotation confidence Medium

Genome context

1: 134239482-134239589 [-]

Mature xtr-miR-7-5p

• Accession: MIMAT0003552
• Description: Xenopus tropicalis xtr-miR-7-5p mature miRNA
• Sequence: 23 - UGGAAGACUAGUGAUUUUGUUG - 44
• Evidence: experimental ; Northern [1]

Mature xtr-miR-7-1-3p

• Accession: MIMAT0052073
• Description: Xenopus tropicalis xtr-miR-7-1-3p mature miRNA
• Sequence: 65 - CAACAAAUCGCAGUCUGCCAUAUGG - 89
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112