Stem-loop xtr-mir-7-2

Accession

MI0004792

Description

Xenopus tropicalis xtr-mir-7-2 precursor miRNA

Sequence

305202 reads, 20692.0 reads per million, 4 experiments

gaggugcaggcugacucuuugUGGAAGACUAGUGAUUUUGUUGuuguaagccuuauugcaugaCAACAAGUCACAGUCUGCCUCAcagugcccagcaauauca
((..(((.(((..(((...((.((.(((((.(((((((.((((((((((......)))))..))))))))))))))))).)).)).))))))..)))...)).

Structure

-  -gg   -a   ug   cuu  U  A     A       U     --     gc 
 ga   ugc  ggc  acu   ug GG AGACU GUGAUUU GUUGu  uguaa  c
 ||   |||  |||  |||   || || ||||| ||||||| |||||  |||||   
 cu   acg  ccg  uga   AC CC UCUGA CACUGAA CAACa  acguu  u
a  aua   ac   --   --c  U  G     -       -     gu     au 

Annotation confidence High

Genome context

3: 110052684-110052786 [-]

Mature xtr-miR-7-5p

• Accession: MIMAT0003552
• Description: Xenopus tropicalis xtr-miR-7-5p mature miRNA
• Sequence: 22 - UGGAAGACUAGUGAUUUUGUUG - 43
• Evidence: experimental ; Northern [1]

Mature xtr-miR-7-2-3p

• Accession: MIMAT0052074
• Description: Xenopus tropicalis xtr-miR-7-2-3p mature miRNA
• Sequence: 64 - CAACAAGUCACAGUCUGCCUCA - 85
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112