Stem-loop xtr-mir-15a

Accession

MI0004799

Description

Xenopus tropicalis xtr-mir-15a precursor miRNA

Literature search

2 open access papers mention xtr-mir-15a
(3 sentences)

Sequence

11771 reads, 1198.0 reads per million, 4 experiments

ccuugacguaaagUAGCAGCACAUAAUGGUUUGUGgguuacacagaggugCAGGCCAUACUGUGCUGCCGCCaaaacacaagg
(((((.......((.((((((((..((((((((((.............))))))))))..)))))))).)).......)))))

Structure

     acguaaa  A        UA          gguua 
ccuug       gU GCAGCACA  AUGGUUUGUG     c
|||||       || ||||||||  ||||||||||     a
ggaac       CG CGUCGUGU  UACCGGACgu     c
     acaaaaC  C        CA          ggaga 

Annotation confidence High

Genome context

2: 149439756-149439838 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-15a

Mature xtr-miR-15a-5p

• Accession: MIMAT0003560
• Description: Xenopus tropicalis xtr-miR-15a-5p mature miRNA
• Sequence: 14 - UAGCAGCACAUAAUGGUUUGUG - 35
• Evidence: not_experimental

Mature xtr-miR-15a-3p

• Accession: MIMAT0052079
• Description: Xenopus tropicalis xtr-miR-15a-3p mature miRNA
• Sequence: 51 - CAGGCCAUACUGUGCUGCCGCC - 72
• Evidence: not_experimental

References