Stem-loop xtr-mir-16a

Accession

MI0004802

Description

Xenopus tropicalis xtr-mir-16a precursor miRNA

Sequence

474320 reads, 52174.0 reads per million, 4 experiments

gccagcaguccuuUAGCAGCACGUAAAUAUUGGUGuuaaaaugguccCAAUAUUAACUGUGCUGCUAGAguaagguuggccu
((((((....((((((((((((((.((((((((.(..........))))))))).)).))))))))))))....))))))..

Structure

--      aguc            -  A        U uuaa 
  gccagc    cuuUAGCAGCAC GU AAUAUUGG G    a
  ||||||    |||||||||||| || |||||||| |     
  cgguug    gAGAUCGUCGUG CA UUAUAACc c    a
uc      gaau            U  A        - uggu 

Annotation confidence High

Genome context

2: 149439621-149439702 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-16a

Mature xtr-miR-16a-5p

• Accession: MIMAT0003563
• Description: Xenopus tropicalis xtr-miR-16a-5p mature miRNA
• Sequence: 14 - UAGCAGCACGUAAAUAUUGGUG - 35
• Evidence: experimental ; Northern [1]

Mature xtr-miR-16a-3p

• Accession: MIMAT0052082
• Description: Xenopus tropicalis xtr-miR-16a-3p mature miRNA
• Sequence: 48 - CAAUAUUAACUGUGCUGCUAGA - 69
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112