Stem-loop xtr-mir-27a

Accession

MI0004809

Description

Xenopus tropicalis xtr-mir-27a precursor miRNA

Literature search

2 open access papers mention xtr-mir-27a
(5 sentences)

Sequence

13618 reads, 931.0 reads per million, 4 experiments

cggcggcccAGGGCUUAGCUGUAUUGUGAGCacugucacucucgcaccugUUCACAGUGGCUAAGUUCCGCgccuc
.((((.(...((((((((((..((((((((((.(((.......)))..)))))))))))))))))))).)))))..

Structure

-c    g ccA          GU          -c   ca 
  ggcg c   GGGCUUAGCU  AUUGUGAGCa  ugu  c
  |||| |   ||||||||||  ||||||||||  |||  u
  ccgC G   CUUGAAUCGG  UGACACUUgu  acg  c
cu    - --C          --          cc   cu 

Annotation confidence High

Genome context

3: 141210724-141210799 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from xtr-mir-27a

Mature xtr-miR-27a-5p

• Accession: MIMAT0052088
• Description: Xenopus tropicalis xtr-miR-27a-5p mature miRNA
• Sequence: 10 - AGGGCUUAGCUGUAUUGUGAGC - 31
• Evidence: not_experimental

Mature xtr-miR-27a-3p

• Accession: MIMAT0003570
• Description: Xenopus tropicalis xtr-miR-27a-3p mature miRNA
• Sequence: 51 - UUCACAGUGGCUAAGUUCCGC - 71
• Evidence: not_experimental

References