Stem-loop xtr-mir-29b

Accession

MI0004812

Description

Xenopus tropicalis xtr-mir-29b precursor miRNA

Literature search

4 open access papers mention xtr-mir-29b
(18 sentences)

Sequence

21060 reads, 1267.0 reads per million, 4 experiments

ucccggaaGCUGGUUUCUUGUGGUGACUUAGAUuuauccaucgcugcaucUAGCACCAUUUGAAAUCAGUGUUcuaggag
(((.(((((((((((((..((((((.((.((((.((........)).))))))))))))..))))))))).)))).))).

Structure

-   c    -         UU      A  U    u  ucc 
 ucc ggaa GCUGGUUUC  GUGGUG CU AGAU ua   a
 ||| |||| |||||||||  |||||| || |||| ||    
 agg ucUU UGACUAAAG  UACCAC GA Ucua gu   u
g   a    G         UU      -  -    c  cgc 

Annotation confidence High

Genome context

2: 52333788-52333867 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-29b

Mature xtr-miR-29b-5p

• Accession: MIMAT0052091
• Description: Xenopus tropicalis xtr-miR-29b-5p mature miRNA
• Sequence: 9 - GCUGGUUUCUUGUGGUGACUUAGAU - 33
• Evidence: not_experimental

Mature xtr-miR-29b-3p

• Accession: MIMAT0003573
• Description: Xenopus tropicalis xtr-miR-29b-3p mature miRNA
• Sequence: 51 - UAGCACCAUUUGAAAUCAGUGUU - 73
• Evidence: not_experimental

References