Stem-loop xtr-mir-30a

Accession

MI0004813

Description

Xenopus tropicalis xtr-mir-30a precursor miRNA

Literature search

4 open access papers mention xtr-mir-30a
(7 sentences)

Sequence

65936 reads, 7467.0 reads per million, 4 experiments

gcgacUGUAAACAUCCUCGACUGGAAGCUgugaagcaguugaagggCUUUCAGUCAGAUGUUUGCAGCUGc
(((.(((((((((((...(((((((((((.(...........).))))))))))).))))))))))).)))

Structure

   a           CUC           g gaag 
gcg cUGUAAACAUC   GACUGGAAGCU u    c
||| |||||||||||   ||||||||||| |    a
cGU GACGUUUGUAG   CUGACUUUCgg a    g
   C           --A           g aguu 

Annotation confidence High

Genome context

5: 92563588-92563658 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-30a

Mature xtr-miR-30a-5p

• Accession: MIMAT0003574
• Description: Xenopus tropicalis xtr-miR-30a-5p mature miRNA
• Sequence: 6 - UGUAAACAUCCUCGACUGGAAGCU - 29
• Evidence: not_experimental

Mature xtr-miR-30a-3p

• Accession: MIMAT0003575
• Description: Xenopus tropicalis xtr-miR-30a-3p mature miRNA
• Sequence: 47 - CUUUCAGUCAGAUGUUUGCAGCUG - 70
• Evidence: not_experimental

References