Stem-loop xtr-mir-98

Accession

MI0004820

Description

Xenopus tropicalis xtr-mir-98 precursor miRNA

Literature search

1 open access papers mention xtr-mir-98
(1 sentences)

Sequence

76983 reads, 7304.0 reads per million, 4 experiments

ucugcccucuucaggaUGAGGUAGUAAGUUGUAUUGUUguggggguuuuuauuuccccaaauuaggagauaaCUAUACAGCUUACUGCCUUCCcugcagcaugguaau
..((((.(((.((((..(((((((((((((((((.((((((((((........))))))..........)))).))))))))))))))))).)))).)).).))))..

Structure

uc    c -  u    aU                 U    ----------      uuu 
  ugcc u cu cagg  GAGGUAGUAAGUUGUAU GUUg          uggggg   u
  |||| | || ||||  ||||||||||||||||| ||||          ||||||    
  augg a ga gucC  UUCCGUCAUUCGACAUA Caau          accccu   u
ua    u c  c    -C                 U    agaggauuaa      uua 

Annotation confidence High

Genome context

8: 25237461-25237568 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-98

Mature xtr-miR-98-5p

• Accession: MIMAT0003581
• Description: Xenopus tropicalis xtr-miR-98-5p mature miRNA
• Sequence: 17 - UGAGGUAGUAAGUUGUAUUGUU - 38
• Evidence: experimental ; Northern [1]

Mature xtr-miR-98-3p

• Accession: MIMAT0052096
• Description: Xenopus tropicalis xtr-miR-98-3p mature miRNA
• Sequence: 73 - CUAUACAGCUUACUGCCUUCC - 93
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112