Stem-loop xtr-mir-99

Accession

MI0004821

Description

Xenopus tropicalis xtr-mir-99 precursor miRNA

Literature search

1 open access papers mention xtr-mir-99
(2 sentences)

Sequence

9914 reads, 694.0 reads per million, 4 experiments

uaacauaAACCCGUAGAUCCGAUCUUGUGgugaauuccuuugcuCAAGCUCGUUUCUAUGGGUCUGUguca
..(((((.(((((((((..(((.((((.((((((....)))))))))).)))..))))))))).)))))..

Structure

ua     A         UC   U    U      u 
  acaua ACCCGUAGA  CGA CUUG Ggugaa u
  ||||| |||||||||  ||| |||| ||||||  
  ugUGU UGGGUAUCU  GCU GAAC ucguuu c
ac     C         UU   C    -      c 

Annotation confidence High

Genome context

2: 27314084-27314154 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-99

Mature xtr-miR-99-5p

• Accession: MIMAT0003582
• Description: Xenopus tropicalis xtr-miR-99-5p mature miRNA
• Sequence: 8 - AACCCGUAGAUCCGAUCUUGUG - 29
• Evidence: experimental ; Northern [1]

Mature xtr-miR-99-3p

• Accession: MIMAT0052097
• Description: Xenopus tropicalis xtr-miR-99-3p mature miRNA
• Sequence: 45 - CAAGCUCGUUUCUAUGGGUCUGU - 67
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112