Stem-loop xtr-mir-142-1

Accession

MI0004842

Description

Xenopus tropicalis xtr-mir-142-1 precursor miRNA

Sequence

11952 reads, 997.0 reads per million, 4 experiments

cagugcagccaccCAUAAAGUAGAAAGCACUACUagacaggacugaacgcUGUAGUGUUUCCUACUUUAuggaugaguguacuggg
(((((((..((.(((((((((((.(((((((((.((.(.(.......))))))))))))).))))))))))).))..)))))))..

Structure

--       gc  c           A         U  a a ga 
  cagugca  ca cCAUAAAGUAG AAGCACUAC ag c g  c
  |||||||  || ||||||||||| ||||||||| || | |  u
  gucaugu  gu gguAUUUCAUC UUUGUGAUG Uc g c  g
gg       ga  a           C         -  - - aa 

Annotation confidence Medium

Genome context

2: 42792005-42792090 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-142-1

Mature xtr-miR-142-5p

• Accession: MIMAT0003602
• Description: Xenopus tropicalis xtr-miR-142-5p mature miRNA
• Sequence: 14 - CAUAAAGUAGAAAGCACUACU - 34
• Evidence: experimental ; Northern [1]

Mature xtr-miR-142-3p

• Accession: MIMAT0003603
• Description: Xenopus tropicalis xtr-miR-142-3p mature miRNA
• Sequence: 51 - UGUAGUGUUUCCUACUUUA - 69
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112