Stem-loop xtr-mir-181b-1

Accession

MI0004849

Description

Xenopus tropicalis xtr-mir-181b-1 precursor miRNA

Sequence

53548 reads, 3838.0 reads per million, 4 experiments

aaggucacaaucAACAUUCAUUGCUGUCGGUGGGuugaguuaagaacacaagCUCGCUGAACGAUGAAUGCAAcugugucccc
..((.((((.....(((((((((...((((((((((..(((...)))...)))))))))).)))))))))....)))).))..

Structure

aa  u    aucAA         CUG          -ga   a 
  gg caca     CAUUCAUUG   UCGGUGGGuu   guu  
  || ||||     |||||||||   ||||||||||   ||| a
  cc gugu     GUAAGUAGC   AGUCGCUCga   caa  
cc  u    -cAAC         --A          aca   g 

Annotation confidence High

Genome context

4: 111405871-111405953 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-181b-1

Mature xtr-miR-181b-5p

• Accession: MIMAT0003609
• Description: Xenopus tropicalis xtr-miR-181b-5p mature miRNA
• Sequence: 13 - AACAUUCAUUGCUGUCGGUGGG - 34
• Evidence: not_experimental

Mature xtr-miR-181b-1-3p

• Accession: MIMAT0052117
• Description: Xenopus tropicalis xtr-miR-181b-1-3p mature miRNA
• Sequence: 53 - CUCGCUGAACGAUGAAUGCAA - 73
• Evidence: not_experimental

References