Stem-loop xtr-mir-192

Accession

MI0004855

Description

Xenopus tropicalis xtr-mir-192 precursor miRNA

Literature search

2 open access papers mention xtr-mir-192
(4 sentences)

Sequence

22077 reads, 2791.0 reads per million, 4 experiments

gaguguacgggccuAUGACCUAUGAAUUGACAGCCaguggaugugaagucugCCUGUCAAUUCUGUAGGCCACagguucguccaccu
..(((.((((((((.((.(((((((((((((((...((((((.....)))))))))))))))).))))).)).)))))))).)))..

Structure

ga   u        A  A     -          CCa      g 
  gug acgggccu UG CCUAU GAAUUGACAG   guggau u
  ||| |||||||| || ||||| ||||||||||   |||||| g
  cac ugcuugga AC GGAUG CUUAACUGUC   Cgucug a
uc   c        C  C     U          ---      a 

Annotation confidence High

Genome context

4: 32896042-32896128 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-192

Mature xtr-miR-192-5p

• Accession: MIMAT0003615
• Description: Xenopus tropicalis xtr-miR-192-5p mature miRNA
• Sequence: 15 - AUGACCUAUGAAUUGACAGCC - 35
• Evidence: experimental ; Northern [1]

Mature xtr-miR-192-3p

• Accession: MIMAT0052120
• Description: Xenopus tropicalis xtr-miR-192-3p mature miRNA
• Sequence: 53 - CCUGUCAAUUCUGUAGGCCAC - 73
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112