Stem-loop xtr-mir-206

Accession

MI0004863

Description

Xenopus tropicalis xtr-mir-206 precursor miRNA

Literature search

3 open access papers mention xtr-mir-206
(7 sentences)

Sequence

9389 reads, 735.0 reads per million, 3 experiments

gaggucacaugcuucuuuauauacccauaugaacuacauuguuaUGGAAUGUAAGGAAGUGUGUGGcuuc
((((((((((((((((((((((..(((((...((......))))))).))))))))))))))))))))))

Structure

                      ac     uga  ua 
gaggucacaugcuucuuuauau  ccaua   ac  c
||||||||||||||||||||||  |||||   ||   
cuucGGUGUGUGAAGGAAUGUA  GGUau   ug  a
                      -A     ---  uu 

Annotation confidence Not enough data

Genome context

5: 150316511-150316580 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-206

Mature xtr-miR-206-3p

• Accession: MIMAT0003623
• Description: Xenopus tropicalis xtr-miR-206-3p mature miRNA
• Sequence: 45 - UGGAAUGUAAGGAAGUGUGUGG - 66
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112