Stem-loop xtr-mir-181a-1

Accession

MI0004865

Description

Xenopus tropicalis xtr-mir-181a-1 precursor miRNA

Sequence

ggcuacuuuagugAACAUUCAACGCUGUCGGUGAGUuugguaucuaaaggcaaACCAUCGAUCGUUGACUGUACAuuacggcaaugccag
(((..((.(((((.(((.((((((..(((((((.(((((.(.......).)))))))))))))))))).))).))))).))....)))..

Structure

--   --ua  u     A   U      CU       A     g au 
  ggc    cu uagug ACA UCAACG  GUCGGUG GUuug u  c
  |||    || ||||| ||| ||||||  ||||||| ||||| |  u
  ccg    gg auuAC UGU AGUUGC  UAGCUAC CAaac g  a
ga   uaac  c     A   C      --       -     g aa 

Annotation confidence Not enough data

Genome context

chr4: 101423843-101423932 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-181a-1

Mature xtr-miR-181a-5p

• Accession: MIMAT0003625
• Description: Xenopus tropicalis xtr-miR-181a-5p mature miRNA
• Sequence: 14 - AACAUUCAACGCUGUCGGUGAGU - 36
• Evidence: experimental ; Northern [1]

Mature xtr-miR-181a-1-3p

• Accession: MIMAT0003626
• Description: Xenopus tropicalis xtr-miR-181a-1-3p mature miRNA
• Sequence: 54 - ACCAUCGAUCGUUGACUGUACA - 75
• Evidence: not_experimental

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112