Stem-loop xtr-mir-214

Accession

MI0004867

Description

Xenopus tropicalis xtr-mir-214 precursor miRNA

Literature search

2 open access papers mention xtr-mir-214
(2 sentences)

Sequence

1158 reads, 121.0 reads per million, 4 experiments

uuggcuggaaggaguugucaugugucUGCCUGUCUACACUUGCUGUGCagaacauccucucaccuguACAGCAGGCACAGACAGGCAGucacaugacaacccagccu
..((((((.....(((((((((((.((((((((((...((((((((((((.............))))))))))))...)))))))))).))))))))))))))))).

Structure

uu      aagga           u          ACA            aacau 
  ggcugg     guugucaugug cUGCCUGUCU   CUUGCUGUGCag     c
  ||||||     ||||||||||| ||||||||||   ||||||||||||     c
  ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     u
-u      -----           u          CAC            cacuc 

Annotation confidence High

Genome context

4: 107420698-107420804 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-214

Mature xtr-miR-214-5p

• Accession: MIMAT0052126
• Description: Xenopus tropicalis xtr-miR-214-5p mature miRNA
• Sequence: 27 - UGCCUGUCUACACUUGCUGUGC - 48
• Evidence: not_experimental

Mature xtr-miR-214-3p

• Accession: MIMAT0003627
• Description: Xenopus tropicalis xtr-miR-214-3p mature miRNA
• Sequence: 68 - ACAGCAGGCACAGACAGGCAG - 88
• Evidence: not_experimental

References