Stem-loop xtr-mir-215

Accession

MI0004868

Description

Xenopus tropicalis xtr-mir-215 precursor miRNA

Literature search

1 open access papers mention xtr-mir-215
(1 sentences)

Sequence

1288 reads, 119.0 reads per million, 4 experiments

aacugguaaccaggaggAUGACCUAUGAAAUGACAGCCacuuccauaccaaacaugUCUGUCAUUUCUGUAGGCCAAUauucugauugcuuuguuga
(((.(((((.(((((...((.(((((((((((((((.((...............)).)))))))))).))))).))...))))).)))))..)))..

Structure

--   -u     c     ggA  A     -          C  cuucca 
  aac  gguaa cagga   UG CCUAU GAAAUGACAG Ca      u
  |||  ||||| |||||   || ||||| |||||||||| ||      a
  uug  ucguu gucuu   AC GGAUG CUUUACUGUC gu      c
ag   uu     a     aUA  C     U          U  acaaac 

Annotation confidence High

Genome context

5: 10621780-10621876 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-215

Mature xtr-miR-215-5p

• Accession: MIMAT0003628
• Description: Xenopus tropicalis xtr-miR-215-5p mature miRNA
• Sequence: 18 - AUGACCUAUGAAAUGACAGCC - 38
• Evidence: not_experimental

Mature xtr-miR-215-3p

• Accession: MIMAT0052127
• Description: Xenopus tropicalis xtr-miR-215-3p mature miRNA
• Sequence: 57 - UCUGUCAUUUCUGUAGGCCAAU - 78
• Evidence: not_experimental

References