Stem-loop xtr-mir-216

Accession

MI0004869

Description

Xenopus tropicalis xtr-mir-216 precursor miRNA

Literature search

1 open access papers mention xtr-mir-216
(1 sentences)

Sequence

1307 reads, 80.0 reads per million, 4 experiments

uggcugugaauuggcuUAAUCUCAGCUGGCAACUGUGagcaguuaauaaauuaucuCACAGUGGUCUCUGGGAUUAUAcuaaacacagcaa
..((((((..((((..(((((((((..(((.((((((((.((((....))))..)))))))).))).)))))))))..)))).))))))..

Structure

ug      aa    cu         CU   A        -c    a 
  gcugug  uugg  UAAUCUCAG  GGC ACUGUGag  aguu a
  ||||||  ||||  |||||||||  ||| ||||||||  ||||  
  cgacac  aauc  AUUAGGGUC  CUG UGACACuc  uuaa u
aa      -a    AU         -U   G        ua    a 

Annotation confidence High

Genome context

5: 35366084-35366174 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-216

Mature xtr-miR-216-5p

• Accession: MIMAT0003629
• Description: Xenopus tropicalis xtr-miR-216-5p mature miRNA
• Sequence: 17 - UAAUCUCAGCUGGCAACUGUG - 37
• Evidence: not_experimental

Mature xtr-miR-216-3p

• Accession: MIMAT0052128
• Description: Xenopus tropicalis xtr-miR-216-3p mature miRNA
• Sequence: 57 - CACAGUGGUCUCUGGGAUUAUA - 78
• Evidence: not_experimental

References