miRBase entry: xtr-mir-217

Stem-loop xtr-mir-217

Accession

MI0004870

Description

Xenopus tropicalis xtr-mir-217 precursor miRNA

Literature search

2 open access papers mention xtr-mir-217
(2 sentences)

Sequence

746 reads, 50.0 reads per million, 4 experiments

uugauguuguagaUACUGCAUCAGGAACUGAUUGGAUcccagggagcagccaucaguuccuaaugcacugccuucggcaucua
..(((((((.((.((.(((((.((((((((((.((.(((...)))....)))))))))))).))))).)).)).)))))))..

Structure

uu       u  a  C     C          U  ---A   c 
  gauguug ag UA UGCAU AGGAACUGAU GG    Ucc  
  ||||||| || || ||||| |||||||||| ||    ||| a
  cuacggc uc gu acgua uccuugacua cc    agg  
au       u  c  c     a          -  gacg   g

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

5: 35366455-35366537 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-217

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature xtr-miR-217-5p

Accession	MIMAT0003630
Description	Xenopus tropicalis xtr-miR-217-5p mature miRNA
Sequence	14 - UACUGCAUCAGGAACUGAUUGGAU - 37
Evidence	not_experimental

Stem-loop xtr-mir-217

Mature xtr-miR-217-5p

References