Stem-loop xtr-mir-425

Accession

MI0004882

Description

Xenopus tropicalis xtr-mir-425 precursor miRNA

Literature search

1 open access papers mention xtr-mir-425
(1 sentences)

Sequence

316 reads, 37.0 reads per million, 4 experiments

gccuuggAAUGACACGAUCACUCCCGUUGAGCcgaaacucacagcgcCAUCGGGAAUAUCGUGUCGCUCcaaagcuc
((.(((((.(((((((((...(((((.((.(((..........).)))).)))))..))))))))).))))).))..

Structure

--  c     A         CAC     U  A  - gaaa 
  gc uuggA UGACACGAU   UCCCG UG GC c    c
  || ||||| |||||||||   ||||| || || |     
  cg aacCU GCUGUGCUA   AGGGC AC cg g    u
cu  a     C         -UA     U  -  c acac 

Annotation confidence High

Genome context

4: 136713847-136713923 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from xtr-mir-425

Mature xtr-miR-425-5p

• Accession: MIMAT0003640
• Description: Xenopus tropicalis xtr-miR-425-5p mature miRNA
• Sequence: 8 - AAUGACACGAUCACUCCCGUUGAGC - 32
• Evidence: not_experimental

Mature xtr-miR-425-3p

• Accession: MIMAT0052137
• Description: Xenopus tropicalis xtr-miR-425-3p mature miRNA
• Sequence: 48 - CAUCGGGAAUAUCGUGUCGCUC - 69
• Evidence: not_experimental

References