Stem-loop xtr-let-7c

Accession

MI0004886

Description

Xenopus tropicalis xtr-let-7c precursor miRNA

Literature search

3 open access papers mention xtr-let-7c
(6 sentences)

Sequence

84351 reads, 6049.0 reads per million, 4 experiments

ugugugcauccagguUGAGGUAGUAGGUUGUAUGGUUuagaaugacacccugggaGUUAACUGUACAACCUUCUAGCUuuccuuggagcucacu
.(((.((.((((((..(((.(((.(((((((((((((...(((..(......)..)))))))))))))))).))).)))..)))))))).))).

Structure

u   u  a      uU   G   U             uag   ga ac 
 gug gc uccagg  GAG UAG AGGUUGUAUGGUU   aau  c  c
 ||| || ||||||  ||| ||| |||||||||||||   |||  |   
 cac cg agguuc  uUC AUC UCCAACAUGUCAA   UUG  g  c
u   u  -      cu   G   U             ---   ag gu 

Annotation confidence Medium

Genome context

2: 27314770-27314863 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-let-7c

Mature xtr-let-7c-5p

• Accession: MIMAT0003644
• Description: Xenopus tropicalis xtr-let-7c-5p mature miRNA
• Sequence: 16 - UGAGGUAGUAGGUUGUAUGGUU - 37
• Evidence: experimental ; Northern [1]

Mature xtr-let-7c-3p

• Accession: MIMAT0052141
• Description: Xenopus tropicalis xtr-let-7c-3p mature miRNA
• Sequence: 56 - GUUAACUGUACAACCUUCUAGCU - 78
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112