Stem-loop xtr-let-7f

Accession

MI0004887

Description

Xenopus tropicalis xtr-let-7f precursor miRNA

Literature search

2 open access papers mention xtr-let-7f
(3 sentences)

Sequence

233915 reads, 22487.0 reads per million, 4 experiments

ugcaggaUGAGGUAGUAGAUUGUAUAGUUuuggggucacacccgaucugggagauaaCUAUACAGUUUACUGUCUUUCcugcg
.((((((.((((((((((((((((((((((((((......)))))..........))))))))))))))))))))))))))).

Structure

u      U                     ----------     gu 
 gcagga GAGGUAGUAGAUUGUAUAGUU          uuggg  c
 |||||| |||||||||||||||||||||          |||||   
 cgucCU UUCUGUCAUUUGACAUAUCaa          agccc  a
g      -                     uagagggucu     ac 

Annotation confidence High

Genome context

8: 25237219-25237301 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-let-7f

Mature xtr-let-7f-5p

• Accession: MIMAT0003645
• Description: Xenopus tropicalis xtr-let-7f-5p mature miRNA
• Sequence: 8 - UGAGGUAGUAGAUUGUAUAGUU - 29
• Evidence: experimental ; Northern [1]

Mature xtr-let-7f-3p

• Accession: MIMAT0052142
• Description: Xenopus tropicalis xtr-let-7f-3p mature miRNA
• Sequence: 58 - CUAUACAGUUUACUGUCUUUC - 78
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112