Stem-loop xtr-mir-29a

Accession

MI0004897

Description

Xenopus tropicalis xtr-mir-29a precursor miRNA

Literature search

3 open access papers mention xtr-mir-29a
(3 sentences)

Sequence

84608 reads, 5974.0 reads per million, 4 experiments

acccuuuuaaaggaUGACUGAUUUCUUCUGGUGUUCagagucuuuuguuuucUAGCACCAUUUGAAAUCGGUUauaaugauggggua
(((((.(((....((((((((((((...(((((((.((((.........)))))))))))...))))))))))))..))).))))).

Structure

-     u   aagg            UUC       C    ucu 
 acccu uua    aUGACUGAUUUC   UGGUGUU agag   u
 ||||| |||    ||||||||||||   ||||||| ||||   u
 ugggg agu    uaUUGGCUAAAG   ACCACGA Ucuu   u
a     u   --aa            UUU       -    uug 

Annotation confidence Medium

Genome context

3: 84740275-84740361 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-29a

Mature xtr-miR-29a-5p

• Accession: MIMAT0052146
• Description: Xenopus tropicalis xtr-miR-29a-5p mature miRNA
• Sequence: 15 - UGACUGAUUUCUUCUGGUGUUC - 36
• Evidence: not_experimental

Mature xtr-miR-29a-3p

• Accession: MIMAT0003656
• Description: Xenopus tropicalis xtr-miR-29a-3p mature miRNA
• Sequence: 53 - UAGCACCAUUUGAAAUCGGUU - 73
• Evidence: not_experimental

References