Stem-loop xtr-mir-148a

Accession

MI0004905

Description

Xenopus tropicalis xtr-mir-148a precursor miRNA

Literature search

3 open access papers mention xtr-mir-148a
(10 sentences)

Sequence

269108 reads, 25253.0 reads per million, 4 experiments

uagucuuuuaaaucAAAGUUCUGUGACACUUAGACUcugaauaugauagcagUCAGUGCACUACAGAACUUUGUuuugggagucug
(((.((((((((.((((((((((((.((((..(((((((.......))).))))))))...)))))))))))).)))))))).)))

Structure

   u        u            --A    UA    -   aa 
uag cuuuuaaa cAAAGUUCUGUG   CACU  GACU cug  u
||| |||||||| ||||||||||||   ||||  |||| |||  a
guc gaggguuu GUUUCAAGACAU   GUGA  CUga gau  u
   u        U            CAC    --    c   ag 

Annotation confidence High

Genome context

6: 41567024-41567109 [-]

Mature xtr-miR-148a-5p

• Accession: MIMAT0052151
• Description: Xenopus tropicalis xtr-miR-148a-5p mature miRNA
• Sequence: 15 - AAAGUUCUGUGACACUUAGACU - 36
• Evidence: experimental ; Northern [1]

Mature xtr-miR-148a-3p

• Accession: MIMAT0003664
• Description: Xenopus tropicalis xtr-miR-148a-3p mature miRNA
• Sequence: 53 - UCAGUGCACUACAGAACUUUGU - 74
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112