Stem-loop xtr-let-7e-1

Accession

MI0004907

Description

Xenopus tropicalis xtr-let-7e-1 precursor miRNA

Sequence

351041 reads, 31038.0 reads per million, 4 experiments

cccugugggaUGAGGUAGUAGGUUGUUUAGUUauugggccgcacccaccaaugggagagaaCUACACAACCUACUGUCUCUCcuaaagug
..((.(((((.(((((((((((((((.(((((..((((.....))))((....))....))))).)))))))))))))))))))).))..

Structure

cc  g     U               U     ----------au    c 
  cu uggga GAGGUAGUAGGUUGU UAGUU            uggg c
  || ||||| ||||||||||||||| |||||            |||| g
  ga aucCU CUCUGUCAUCCAACA AUCaa            accc c
gu  a     -               C     gagaggguaacc    a 

Annotation confidence High

Genome context

4: 152411172-152411261 [+]

Mature xtr-let-7e-5p

• Accession: MIMAT0003666
• Description: Xenopus tropicalis xtr-let-7e-5p mature miRNA
• Sequence: 11 - UGAGGUAGUAGGUUGUUUAGUU - 32
• Evidence: experimental ; Northern [1]

Mature xtr-let-7e-1-3p

• Accession: MIMAT0052154
• Description: Xenopus tropicalis xtr-let-7e-1-3p mature miRNA
• Sequence: 62 - CUACACAACCUACUGUCUCUC - 82
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112