Stem-loop xtr-let-7a

Accession

MI0004908

Description

Xenopus tropicalis xtr-let-7a precursor miRNA

Literature search

7 open access papers mention xtr-let-7a
(16 sentences)

Sequence

278022 reads, 25075.0 reads per million, 4 experiments

gugggcuccaggcUGAGGUAGUAGGUUGUAUAGUUgaggauaacaccaaaggagauaaCUGUACAGCCUCCUAUCUUUCCcuggggcuu
...(((((((((..(((((((.((((((((((((((.((......))........)))))))))))))).)))))))..))))))))).

Structure

gug         cU       U              -------a  au 
   ggcuccagg  GAGGUAG AGGUUGUAUAGUUg        gg  a
   |||||||||  ||||||| ||||||||||||||        ||   
   ucggggucC  UUCUAUC UCCGACAUGUCaau        cc  a
--u         CU       C              agaggaaa  ac 

Annotation confidence High

Genome context

7: 120158063-120158151 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-let-7a

Mature xtr-let-7a-5p

• Accession: MIMAT0003667
• Description: Xenopus tropicalis xtr-let-7a-5p mature miRNA
• Sequence: 14 - UGAGGUAGUAGGUUGUAUAGUU - 35
• Evidence: not_experimental

Mature xtr-let-7a-3p

• Accession: MIMAT0052156
• Description: Xenopus tropicalis xtr-let-7a-3p mature miRNA
• Sequence: 59 - CUGUACAGCCUCCUAUCUUUCC - 80
• Evidence: not_experimental

References