Stem-loop xtr-mir-23b

Accession

MI0004913

Description

Xenopus tropicalis xtr-mir-23b precursor miRNA

Literature search

2 open access papers mention xtr-mir-23b
(2 sentences)

Sequence

11724 reads, 1193.0 reads per million, 4 experiments

ccgguguggcuguuUGGGUUCCUGGCAUGCUGAUUugugaguuaagauuaaaAUCACAUUGCCAGGGAUUACCACacaaccauguccu
..(((((((.(((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))).))))).)).

Structure

cc  -     c   u   --          -  C      gugagu 
  gg ugugg ugu UGG  GUUCCUGGCA UG UGAUUu      u
  || ||||| ||| |||  |||||||||| || ||||||       
  cc guacc aca ACC  UAGGGACCGU AC ACUAaa      a
-u  u     a   C   AU          U  -      auuaga 

Annotation confidence High

Genome context

1: 135663440-135663527 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from xtr-mir-23b

Mature xtr-miR-23b-5p

• Accession: MIMAT0052157
• Description: Xenopus tropicalis xtr-miR-23b-5p mature miRNA
• Sequence: 15 - UGGGUUCCUGGCAUGCUGAUU - 35
• Evidence: not_experimental

Mature xtr-miR-23b-3p

• Accession: MIMAT0003673
• Description: Xenopus tropicalis xtr-miR-23b-3p mature miRNA
• Sequence: 53 - AUCACAUUGCCAGGGAUUACCAC - 75
• Evidence: not_experimental

References