Stem-loop xtr-mir-25-1

Accession

MI0004914

Description

Xenopus tropicalis xtr-mir-25-1 precursor miRNA

Sequence

gcugguguugacaggcagagacaggagcaacugcuggugugccuugguagCAUUGCACUUGUCUCGGUCUGAcagugucggc
((((((((((.(((((.((((((((.((((.(((((.((.....)).))))))))).)))))))).))))).))))))))))

Structure

          a     a        a    c     g  u 
gcugguguug caggc gagacagg gcaa ugcug ug g
|||||||||| ||||| |||||||| |||| ||||| || c
cggcugugac GUCUG CUCUGUUC CGUU ACgau gu c
          A     G        A    -     g  u 

Annotation confidence Not enough data

Genome context

KV460378.1: 106999-107080 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-25-1

Mature xtr-miR-25

• Accession: MIMAT0003674
• Description: Xenopus tropicalis xtr-miR-25 mature miRNA
• Sequence: 51 - CAUUGCACUUGUCUCGGUCUGA - 72
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112