Accession
MI0004916
Description
Xenopus tropicalis
xtr-mir-27c-1 precursor miRNA
Sequence
13005
reads,
886.0
reads per million, 4 experiments
cucuagagaggcAGGACUUAGCUGGCUCUGUGAacaggucuugugugucaaugUUCACAGUGGCUAAGUUCCACcccacugg
..((((.(.((..(((((((((((...(((((((((.(.(......).)..))))))))))))))))))))..)).).))))
..((((.(.((..(((((((((((...(((((((((.(.(......).)..))))))))))))))))))))..)).).))))
Structure
cu a a cA GCU -g u uu cuag g gg GGACUUAGCUG CUGUGAaca g c g |||| | || ||||||||||| ||||||||| | | gguc c cC CUUGAAUCGGU GACACUUgu c g u -- a c AC --- aa u ug
Annotation confidence
High
Do you think this miRNA is real?
Genome context
4: 90015673-90015754 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from xtr-mir-27c-1
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature xtr-miR-27c-5p
| Accession | MIMAT0052158 |
| Description | Xenopus tropicalis xtr-miR-27c-5p mature miRNA |
| Sequence | 13 - AGGACUUAGCUGGCUCUGUGA - 33 |
| Evidence | not_experimental |
Mature xtr-miR-27c-3p
| Accession | MIMAT0003675 |
| Description | Xenopus tropicalis xtr-miR-27c-3p mature miRNA |
| Sequence | 54 - UUCACAGUGGCUAAGUUCCAC - 74 |
| Evidence | not_experimental |
References
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