Stem-loop xtr-mir-30c-2

Accession

MI0004919

Description

Xenopus tropicalis xtr-mir-30c-2 precursor miRNA

Sequence

46871 reads, 5277.0 reads per million, 4 experiments

gagagacagauacUGUAAACAUCCUACACUCUCAGCuguggaaauacaaagCUGGGGGAAGGCUGUUUACUCUcucug
((((((........(((((((.(((...(((((((((.((......)).))))))))).))).)))))))))))))..

Structure

--      cagauacU       U   ACA         g  ga 
  gagaga        GUAAACA CCU   CUCUCAGCu ug  a
  ||||||        ||||||| |||   ||||||||| ||   
  cucUCU        CAUUUGU GGA   GGGGGUCga ac  a
gu      --------       C   --A         a  au 

Annotation confidence High

Genome context

5: 92570966-92571043 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-30c-2

Mature xtr-miR-30c-5p

• Accession: MIMAT0003577
• Description: Xenopus tropicalis xtr-miR-30c-5p mature miRNA
• Sequence: 14 - UGUAAACAUCCUACACUCUCAGC - 36
• Evidence: not_experimental

Mature xtr-miR-30c-2-3p

• Accession: MIMAT0052093
• Description: Xenopus tropicalis xtr-miR-30c-2-3p mature miRNA
• Sequence: 52 - CUGGGGGAAGGCUGUUUACUCU - 73
• Evidence: not_experimental

References