Stem-loop xtr-mir-30e

Accession

MI0004920

Description

Xenopus tropicalis xtr-mir-30e precursor miRNA

Literature search

1 open access papers mention xtr-mir-30e
(1 sentences)

Sequence

226583 reads, 28558.0 reads per million, 4 experiments

gggcaguuacagccucUGUAAACAUCCUUGACUGGAAGcugugaaauaaugauaguagCUUUCAGUCGGAUGUUUACAGCUGcuagcugc
..(((((((((((...(((((((((((..((((((((((((..............))))))))))))))))))))))))))).)))))))

Structure

gg       -    cuc           UU            ugaaau 
  gcaguua cagc   UGUAAACAUCC  GACUGGAAGcug      a
  ||||||| ||||   |||||||||||  ||||||||||||       
  cgucgau GUCG   ACAUUUGUAGG  CUGACUUUCgau      a
--       c    ---           --            gauagu 

Annotation confidence High

Genome context

2: 87867492-87867581 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-30e

Mature xtr-miR-30e-5p

• Accession: MIMAT0003678
• Description: Xenopus tropicalis xtr-miR-30e-5p mature miRNA
• Sequence: 17 - UGUAAACAUCCUUGACUGGAAG - 38
• Evidence: not_experimental

Mature xtr-miR-30e-3p

• Accession: MIMAT0052159
• Description: Xenopus tropicalis xtr-miR-30e-3p mature miRNA
• Sequence: 59 - CUUUCAGUCGGAUGUUUACAGCUG - 82
• Evidence: not_experimental

References