Stem-loop xtr-mir-128-1

Accession

MI0004932

Description

Xenopus tropicalis xtr-mir-128-1 precursor miRNA

Literature search

1 open access papers mention xtr-mir-128-1
(1 sentences)

Sequence

97014 reads, 7733.0 reads per million, 4 experiments

ugagcggcuggaacCGGGCCCGGAGCGCUGUCUGAGAggguuuaaguuucUCACAGUGAACCGGUCUCUUUUucagucucuuc
.(((.((((((((..(((.((((..((((((..((((((.......))))))))))))..)))).)))..)))))))).))).

Structure

u   c        cC   C    AG      CU      gu 
 gag ggcuggaa  GGG CCGG  CGCUGU  GAGAgg  u
 ||| ||||||||  ||| ||||  ||||||  ||||||  u
 uuc cugacuUU  CUC GGCC  GUGACA  CUcuuu  a
c   u        UU   U    AA      --      ga 

Annotation confidence High

Genome context

9: 84091556-84091638 [-]

Mature xtr-miR-128-1-5p

• Accession: MIMAT0052101
• Description: Xenopus tropicalis xtr-miR-128-1-5p mature miRNA
• Sequence: 15 - CGGGCCCGGAGCGCUGUCUGAGA - 37
• Evidence: experimental ; Northern [1]

Mature xtr-miR-128-3p

• Accession: MIMAT0003589
• Description: Xenopus tropicalis xtr-miR-128-3p mature miRNA
• Sequence: 51 - UCACAGUGAACCGGUCUCUUUU - 72
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112