Stem-loop xtr-mir-143

Accession

MI0004937

Description

Xenopus tropicalis xtr-mir-143 precursor miRNA

Literature search

3 open access papers mention xtr-mir-143
(13 sentences)

Sequence

316165 reads, 20525.0 reads per million, 4 experiments

ugucucccagcccaaGGUGCAGUGCUGCAUCUCUGGucaguugugagucUGAGAUGAAGCACUGUAGCUCGggaagggggaau
..((((((..(((.((.(((((((((.((((((.(((((....))).)).)))))).))))))))).)).)))..))))))..

Structure

ug      ag   a  G         G      U  -   g 
  ucuccc  ccc aG UGCAGUGCU CAUCUC GG uca u
  ||||||  ||| || ||||||||| |||||| || |||  
  aggggg  ggG UC AUGUCACGA GUAGAG cu agu u
ua      aa   C  G         A      U  g   g 

Annotation confidence High

Genome context

3: 40376530-40376612 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-143

Mature xtr-miR-143-5p

• Accession: MIMAT0052165
• Description: Xenopus tropicalis xtr-miR-143-5p mature miRNA
• Sequence: 16 - GGUGCAGUGCUGCAUCUCUGG - 36
• Evidence: experimental ; Northern [1]

Mature xtr-miR-143-3p

• Accession: MIMAT0003686
• Description: Xenopus tropicalis xtr-miR-143-3p mature miRNA
• Sequence: 50 - UGAGAUGAAGCACUGUAGCUCG - 71
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112