Stem-loop xtr-mir-221

Accession

MI0004953

Description

Xenopus tropicalis xtr-mir-221 precursor miRNA

Literature search

4 open access papers mention xtr-mir-221
(20 sentences)

Sequence

36800 reads, 2777.0 reads per million, 4 experiments

acccagacuuuggcgugcACCUGGCAUACAAUGUAGAAAACUguguuugcaaagcaacAGCUACAUUGUCUGCUGGGUUUCaugcugaaugga
..(((...(((((((((.((((((((.(((((((((....((((((((...)))).))))))))))))).))))))))..)))))))))))).

Structure

ac   gac         -c        U         AAAA    -    g 
  cca   uuuggcgug  ACCUGGCA ACAAUGUAG    CUgu guuu  
  |||   |||||||||  |||||||| |||||||||    |||| |||| c
  ggu   aagucguaC  UGGGUCGU UGUUACAUC    GAca cgaa  
-a   ---         UU        C         ----    a    a 

Annotation confidence High

Genome context

2: 55676422-55676514 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-221

Mature xtr-miR-221-5p

• Accession: MIMAT0052175
• Description: Xenopus tropicalis xtr-miR-221-5p mature miRNA
• Sequence: 19 - ACCUGGCAUACAAUGUAGAAAACU - 42
• Evidence: not_experimental

Mature xtr-miR-221-3p

• Accession: MIMAT0003700
• Description: Xenopus tropicalis xtr-miR-221-3p mature miRNA
• Sequence: 59 - AGCUACAUUGUCUGCUGGGUUUC - 81
• Evidence: not_experimental

References