Stem-loop xtr-mir-133a

Accession

MI0004962

Description

Xenopus tropicalis xtr-mir-133a precursor miRNA

Literature search

4 open access papers mention xtr-mir-133a
(14 sentences)

Sequence

25697 reads, 3902.0 reads per million, 4 experiments

caaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAUcaccucuucaauggauUUGGUCCCCUUCAACCAGCUGUaggauugcauug
((((((..(.(((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))).)..))))))

Structure

      uu g   a       AA  U  A        accuc 
caaugc  u cua AGCUGGU  AA GG ACCAAAUc     u
||||||  | ||| |||||||  || || ||||||||      
guuacg  a gaU UCGACCA  UU CC UGGUUuag     u
      uu g   G       AC  C  C        guaac 

Annotation confidence High

Genome context

6: 108621908-108621993 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-133a

Mature xtr-miR-133a-5p

• Accession: MIMAT0052178
• Description: Xenopus tropicalis xtr-miR-133a-5p mature miRNA
• Sequence: 15 - AGCUGGUAAAAUGGAACCAAAU - 36
• Evidence: experimental ; Northern [1]

Mature xtr-miR-133a-3p

• Accession: MIMAT0003708
• Description: Xenopus tropicalis xtr-miR-133a-3p mature miRNA
• Sequence: 53 - UUGGUCCCCUUCAACCAGCUGU - 74
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112