Stem-loop fru-mir-10d

Accession

MI0004967

Description

Fugu rubripes fru-mir-10d precursor miRNA

Sequence

182109 reads, 2823.0 reads per million, 12 experiments

ccggugagguggaucgucgucuauaaaUACCCUGUAGAACCGAAUGUGUGUGcagcugacuugaucaCAGAUUGGGUUCUAGGGGAGUCuaugggcgaugaauaaucacuga
.((((((......((((((((((((...(((((.(((((((.(((.((((..(((.....)))..)))).))).))))))).))).)).))))))))))))....)))))).

Structure

c      ggugga            aaU  -   G       G   G    UG   c 
 cgguga      ucgucgucuaua   AC CCU UAGAACC AAU UGUG  cag u
 ||||||      ||||||||||||   || ||| ||||||| ||| ||||  ||| g
 gucacu      aguagcggguau   UG GGG AUCUUGG UUA ACac  guu a
a      --aaua            --C  A   G       G   G    ua   c 

Annotation confidence High

Genome context

ref|NC_042288.1|: 7590431-7590542 [-]

Mature fru-miR-10d-5p

• Accession: MIMAT0003773
• Description: Fugu rubripes fru-miR-10d-5p mature miRNA
• Sequence: 28 - UACCCUGUAGAACCGAAUGUGUGUG - 52
• Evidence: not_experimental

Mature fru-miR-10d-3p

• Accession: MIMAT0052924
• Description: Fugu rubripes fru-miR-10d-3p mature miRNA
• Sequence: 68 - CAGAUUGGGUUCUAGGGGAGUC - 89
• Evidence: not_experimental

References

1. PubMed ID: 16736008
   The zebrafish hoxDb cluster has been reduced to a single microRNA
   "Woltering JM, Durston AJ"
   "Nat Genet (2006) 38:601-602