Stem-loop bta-mir-15b

Accession

MI0005012

Description

Bos taurus bta-mir-15b precursor miRNA mir-15

Gene
family

RF00455; mir-15

Literature search

20 open access papers mention bta-mir-15b
(38 sentences)

Sequence

11319 reads, 173 reads per million, 69 experiments

uugagaccuuaaaguacugUAGCAGCACAUCAUGGUUUACAuacuacagucaagaugcgaaucauuauuugcugcucuagaaauuuaaggaaauucau
.((((.(((((((...(((.(((((((.((.(((((((.(((.((.......))))).))))))).)).))))))).)))...)))))))...)))).

Structure

u    --a       gua   U       C  C       A   a  ac 
 ugag   ccuuaaa   cug AGCAGCA AU AUGGUUU CAu cu  a
 ||||   |||||||   ||| ||||||| || ||||||| ||| ||  g
 acuu   ggaauuu   gau ucgucgu ua uacuaag gua ga  u
u    aaa       aaa   c       u  u       c   -  ac 

Annotation confidence High

Genome context

chr1: 108321741-108321838 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-15b

Mature bta-miR-15b

• Accession: MIMAT0003792
• Description: Bos taurus bta-miR-15b mature miRNA
• Sequence: 20 - UAGCAGCACAUCAUGGUUUACA - 41
• Evidence: experimental ; cloned [1-2]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 17306260
   Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
   "Gu Z, Eleswarapu S, Jiang H"
   "FEBS Lett (2007) 581:981-988