Stem-loop bta-mir-215

Accession

MI0005016

Description

Bos taurus bta-mir-215 precursor miRNA mir-192

Gene
family

RF00130; mir-192

Literature search

49 open access papers mention bta-mir-215
(210 sentences)

Sequence

7666599 reads, 10729.0 reads per million, 321 experiments

uguacaggaaaaUGACCUAUGAAUUGACAGACAAcgugacuaagucugUCUGUCAUUUCUGUAGGCCAAUguucuguau
.((((((((...((.((((((((.(((((((((((........)).))))))))).))).))))).))...))))))))

Structure

u        aaa  A     -   U         -  gug 
 guacagga   UG CCUAU GAA UGACAGACA Ac   a
 ||||||||   || ||||| ||| ||||||||| ||    
 uaugucuu   AC GGAUG CUU ACUGUCUgu ug   c
-        gUA  C     U   U         c  aau 

Annotation confidence High

Genome context

16: 23607646-23607724 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-215

Mature bta-miR-215-5p

• Accession: MIMAT0003797
• Description: Bos taurus bta-miR-215-5p mature miRNA
• Sequence: 13 - UGACCUAUGAAUUGACAGACAA - 34
• Evidence: experimental ; cloned [1]

Mature bta-miR-215-3p

• Accession: MIMAT0060948
• Description: Bos taurus bta-miR-215-3p mature miRNA
• Sequence: 49 - UCUGUCAUUUCUGUAGGCCAAU - 70
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43