Stem-loop bta-mir-30e

Accession

MI0005018

Description

Bos taurus bta-mir-30e precursor miRNA

Literature search

20 open access papers mention bta-mir-30e
(139 sentences)

Sequence

347361 reads, 4607 reads per million, 78 experiments

gggcagucuuugcuacUGUAAACAUCCUUGACUGGAAGCUguaaggcguugcaaggagcuuucagucggauguuuacagcggcaggcugcca
.((((((((..(((.((((((((((((..(((((((((((.....((...))....))))))))))))))))))))))).))))))))))).

Structure

g        uu   a            UU           guaag  g 
 ggcagucu  gcu cUGUAAACAUCC  GACUGGAAGCU     gc  
 ||||||||  ||| ||||||||||||  |||||||||||     || u
 ccgucgga  cgg gacauuuguagg  cugacuuucga     cg  
a        --   c            --           -ggaa  u 

Annotation confidence High

Genome context

chr3: 106453038-106453129 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-30e

Mature bta-miR-30e-5p

• Accession: MIMAT0003799
• Description: Bos taurus bta-miR-30e-5p mature miRNA
• Sequence: 17 - UGUAAACAUCCUUGACUGGAAGCU - 40
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43