Stem-loop bta-mir-29c

Accession

MI0005044

Description

Bos taurus bta-mir-29c precursor miRNA

Literature search

132 open access papers mention bta-mir-29c
(579 sentences)

Sequence

1160600 reads, 525.0 reads per million, 319 experiments

aucucuuacacaggcUGACCGAUUUCUCCUGGUGUUCagagucuguuuuugucUAGCACCAUUUGAAAUCGGUUAugauguaggggga
..((((((((((...(((((((((((...(((((((.(((...........))))))))))...))))))))))))).))))))))..

Structure

au        -  ggc           UCC       C   gucu 
  cucuuaca ca   UGACCGAUUUC   UGGUGUU aga    g
  |||||||| ||   |||||||||||   ||||||| |||    u
  ggggaugu gu   AUUGGCUAAAG   ACCACGA Ucu    u
ag        a  ---           UUU       -   guuu 

Annotation confidence High

Genome context

16: 75577606-75577693 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-29c

Mature bta-miR-29c-5p

• Accession: MIMAT0050791
• Description: Bos taurus bta-miR-29c-5p mature miRNA
• Sequence: 16 - UGACCGAUUUCUCCUGGUGUUC - 37
• Evidence: experimental ; cloned [1-2]

Mature bta-miR-29c-3p

• Accession: MIMAT0003829
• Description: Bos taurus bta-miR-29c-3p mature miRNA
• Sequence: 54 - UAGCACCAUUUGAAAUCGGUUA - 75
• Evidence: experimental ; cloned [1-2]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 17306260
   Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
   "Gu Z, Eleswarapu S, Jiang H"
   "FEBS Lett (2007) 581:981-988