miRBase entry: bta-mir-450a-2

Stem-loop bta-mir-450a-2


Accession
MI0005048
Description
Bos taurus bta-mir-450a-2 precursor miRNA mir-450
Gene
family?
RF00708; mir-450

Literature search
5 open access papers mention bta-mir-450a-2
(7 sentences)

Sequence

3977 reads, 57 reads per million, 67 experiments
caaagaaagaugcuaaacuauUUUUGCGAUGUGUUCCUAAUAUguaaucuaaauguauugggaacauuuugcauucauaguuuuguaucaau
........(((((.(((((((...(((((.(((((((((((((((.......))))))))))))))).)))))...))))))).)))))...

Structure
caaagaaa     u       UUU     U               aa 
        gaugc aaacuau   UGCGA GUGUUCCUAAUAUgu  u
        ||||| |||||||   ||||| |||||||||||||||  c
        cuaug uuugaua   acguu uacaaggguuaugua  u
-----uaa     u       cuu     u               aa 


Annotation confidence Not enough data
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Genome context
chrX: 18282193-18282284 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from bta-mir-450a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-450a

Accession MIMAT0003834
Description Bos taurus bta-miR-450a mature miRNA
Sequence 22 - UUUUGCGAUGUGUUCCUAAUAU - 43
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43