Stem-loop bta-mir-450a-2

Accession

MI0005048

Description

Bos taurus bta-mir-450a-2 precursor miRNA mir-450

Gene
family

RF00708; mir-450

Literature search

4 open access papers mention bta-mir-450a-2
(6 sentences)

Sequence

289322 reads, 154.0 reads per million, 318 experiments

caaagaaagaugcuaaacuauUUUUGCGAUGUGUUCCUAAUAUguaaucuaaauguAUUGGGAACAUUUUGCAUUCAUAGuuuuguaucaau
........(((((.(((((((...(((((.(((((((((((((((.......))))))))))))))).)))))...))))))).)))))...

Structure

caaagaaa     u       UUU     U               aa 
        gaugc aaacuau   UGCGA GUGUUCCUAAUAUgu  u
        ||||| |||||||   ||||| |||||||||||||||  c
        cuaug uuuGAUA   ACGUU UACAAGGGUUAugua  u
-----uaa     u       CUU     U               aa 

Annotation confidence High

Genome context

X: 18236527-18236618 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from bta-mir-450a-2

Mature bta-miR-450a-5p

• Accession: MIMAT0003834
• Description: Bos taurus bta-miR-450a-5p mature miRNA
• Sequence: 22 - UUUUGCGAUGUGUUCCUAAUAU - 43
• Evidence: experimental ; cloned [1]

Mature bta-miR-450a-2-3p

• Accession: MIMAT0050793
• Description: Bos taurus bta-miR-450a-2-3p mature miRNA
• Sequence: 57 - AUUGGGAACAUUUUGCAUUCAUAG - 80
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43