Stem-loop cel-mir-785

Accession

MI0005185

Description

Caenorhabditis elegans cel-mir-785 precursor miRNA mir-785

Gene
family

RF02244; mir-785

Sequence

8692 reads, 71 reads per million, 15 experiments

gcucuuuuucucacccaucAGCACAGAAUUUUUCGCUAACAgaaaccucaaaacaaugUAAGUGAAUUGUUUUGUGUAGAugguggaaaugagc
((((..((((.((((.(((.(((((((((..((((((.(((...............))).))))))..))))))))).))))))))))).))))

Structure

    uu    u    c   A         UU      A   gaaacc 
gcuc  uuuc cacc auc GCACAGAAU  UUCGCU ACA      u
||||  |||| |||| ||| |||||||||  |||||| |||      c
cgag  aaag gugg uAG UGUGUUUUG  AAGUGA Ugu      a
    -u    -    -   A         UU      A   aacaaa 

Annotation confidence Not enough data

Genome context

chrX: 3004668-3004761 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cel-mir-785

Mature cel-miR-785-3p

• Accession: MIMAT0004220
• Description: Caenorhabditis elegans cel-miR-785-3p mature miRNA
• Sequence: 59 - UAAGUGAAUUGUUUUGUGUAGA - 80
• Evidence: experimental ; 454 [1], Illumina [2], CLIPseq [3]

Mature cel-miR-785-5p

• Accession: MIMAT0032015
• Description: Caenorhabditis elegans cel-miR-785-5p mature miRNA
• Sequence: 20 - AGCACAGAAUUUUUCGCUAACA - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


2. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


3. PubMed ID: 20062054
   Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
   "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
   "Nat Struct Mol Biol (2010) 17:173-179