Stem-loop cel-mir-786

Accession

MI0005186

Description

Caenorhabditis elegans cel-mir-786 precursor miRNA mir-786

Gene
family

RF00895; mir-786

Literature search

3 open access papers mention cel-mir-786
(7 sentences)

Sequence

23913 reads, 218 reads per million, 13 experiments

gggauaguucccgauCGAAUAUCAGUUGGGGUAUUUACAaaaagacaaaauugUAAUGCCCUGAAUGAUGUUCAAUcggugaugaaucuc
(((((...(((((((.((((((((.((((((((((.((((..........)))))))))))))).)))))))).))))).))...)))))

Structure

     agu  -     C        G          U    aaag 
gggau   uc ccgau GAAUAUCA UUGGGGUAUU ACAa    a
|||||   || ||||| |||||||| |||||||||| ||||     
cucua   ag ggcUA CUUGUAGU AGUCCCGUAA Uguu    c
     agu  u     A        A          -    aaaa 

Annotation confidence Medium

Genome context

chrX: 7882751-7882840 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cel-mir-786

Mature cel-miR-786-5p

• Accession: MIMAT0015239
• Description: Caenorhabditis elegans cel-miR-786-5p mature miRNA
• Sequence: 16 - CGAAUAUCAGUUGGGGUAUUUACA - 39
• Evidence: experimental ; CLIPseq [3]

Mature cel-miR-786-3p

• Accession: MIMAT0004221
• Description: Caenorhabditis elegans cel-miR-786-3p mature miRNA
• Sequence: 54 - UAAUGCCCUGAAUGAUGUUCAAU - 76
• Evidence: experimental ; 454 [1], Illumina [2], CLIPseq [3]

References

1. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


2. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


3. PubMed ID: 20062054
   Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
   "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
   "Nat Struct Mol Biol (2010) 17:173-179